Python 3.13 Support: If you are using pip install on Linux with Python 3.13, you no longer need the standalone installer as a workaround. Wheels are now explicitly built for Python 3.9 through 3.13 for all supported platforms.
Test Exclusion: Starting from v1.2.2, tests are excluded by default in the CLI and library API to reduce noise. This applies consistently to main analysis, standalone metrics, file statistics, and clone detection. Use --include-tests to scan test files. Dependency analysis remains test-aware by design and scans test/dev imports separately from production imports.
Pre-commit Hooks: The hook rev should be updated to v1.2.1 in your .pre-commit-config.yaml.
Parser Engine: Switched from rustpython-parser to ruff_python_parser. This improves performance and Python 3.12+ compatibility but may handle syntax errors more strictly.
Notebooks: include_ipynb and ipynb_cells are currently CLI-only flags. Verify they are passed in your command line arguments, as they are not yet supported in .cytoscnpy.toml.
CFG Support: Control Flow Graph analysis is now an opt-in feature. Build with --features cfg if you rely on deep behavioral analysis for clone detection.